Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015906584.1_cds_XP_016456731.1_50538
CDS Infomation

[gene=LOC107780681] [db_xref=GeneID:107780681] [protein=translation initiation factor IF-2, chloroplastic-like] [protein_id=XP_016456731.1] [location=join(55788..57290,57397..57429,57557..57670,57787..57936,58032..58130,58207..58269,58933..59088,59298..59363,59878..60108,61032..61307,61840..62028,62769..62930)] [gbkey=CDS]
Sequence

ATGACTAGTATGGCTTCCCTAGTGAGTTTGGGGAGTGTTTGTGGATGTTCTTCTGGTGGA
CAGTTTGAAGGGTCATTCTCACTAGTTAGGAGGGTTTCTTTAGCCAACAACTTTAGAAAC
TTTAATAGAATTTGGGTTGGAAAAAGATGGCGTTATGTTTCTGTCTGTAGATACTCAGTT
ACCACGGATTTTGTTGCTGCTGATCAGGGGACATCAATTTCCCTTGATTCCTCATCCAGG
AGTAATAAGGAGGACGATGCTGATCTCTTACTTAAGCCGTCCCCGAAACCACAGTTAAAA
CCTGGACCTAAACCTGGGCCTGCTTTAGGAATGGGTCCAGTCAGTAGGAATGGACCGGTT
AGTAGCTCTGGTTCTGATGATGAAAAGGGAAATCCTAATGAAGAAGAGAGAAGCAAGGTC
ATCGAGTCACTTGGAGAGGCATTAGAGAAAGCGGAGAAGCTAGAAACTAACAGAAAAGCA
AATGTGTTGGTTAATAATAAGTCGTCTGCCAATGCACGTACCGCACAAAGAAATAGCAAG
CCAGTTGATTCTGATGATTCTTCCAACAGGAAGTCCAAAACTTTGAAGAGTGTCTGGAAA
AAAGGTAATCCAGTTGCTGCTATACAAAAAGTGGTAAAACCACCACCCTCTAAACAGGAA
CCAGTGGCTGATAGTGGAATTAGGAAGAGTGAGTCTCAAACTGTTGCCCCGCTAAAACCC
CCTCAGCCACCCCAGAAGGTTCAACCACAGTTACAAGCAAGACCCTCTGTAGCTCCTCCT
CCTCCTGTTATCAAGAAACCGGTGATATTAAAGGATGTCGGTGCAGCGGCAAAGCCGCCA
CCCACTGACGGAATTGAATCAGCTGGAAAGACCAAAGAACGCAAGACAATATTGGTCGAC
AAGTTTGCTTCCAAGAAACCAGCTGTTGATCCTATGATTGCTCAGGCTGTTTTAGCACCT
CCAAAACCTGGAAAGAGCCCACCTCCTGGTAAATTCAGGGAAGAGTTCCGGAAGAAGGGT
GGTGCATCTGGAGGACAACGCAGGCGTATGGTTGATGATGGGATTCCTGACGAGGAAGCA
TCAGAGCTTGATGTTTCGATTCCTGGTGCAGTAGCAAGGAAGGGAAGAAAGTGGACCAAG
GCAAGTCGCAAGGCAGCCCGACTTAGGGCTGCTAAAGAGTCTGCACCTGTCAAAGTAGAA
ATTCTAGAGGTTGGTGAAGAAGGCATGCCGACTGAGGAGTTGGCCTACAACTTAGCTACT
AGTGAAGGTGAAATCCTTGGTCTTCTATACTCAAAAGGAATCAAGCCTGATGGTGTGCAA
ACTCTCAGTAATGACATGGTGAAGATGGTTTGTAAAGAATATGAAGTGGAAGTTATTGAT
GCTGCCACCGTTAAAGTGGAAGAGATGGCAAGAAAGAAGGAAATTTTCAATGAAGATGAC
TTGGACAAATTACAAGATAGACCCCCTGTCATAACTATAATGGGTCATGTTGATCATGGA
AAGACTACTCTCTTGGACCATATACGCAAGACCAAGGTGGCGGCGTCTGAAGCTGGTGGA
ATTACTCAAGGAATTGGGGCATATAAGGTGCAAGTTCCTATTGACACCAAGCCCCAGATA
TGTGTTTTTCTTGATACACCTGGACACGAGGCGTTTGGAGCAATGAGAGCTCGTGGAGCA
AGAGTAACAGACATTGCTATCATTGTAGTAGCTGCTGATGACGGTATTCGGCCTCAGACA
AATGAGGCCATAGCACATGCCAAGGCAGCTGGAGTTCCAATTGTGATTGCCATAAATAAG
ATTGATAAGGATGGAGCAAATCCTGAGCGAGTCATGCAAGAACTTTCCTCCATTGGTTTG
ATGCCAGAAGATTGGGGCGGTGACGTTCCAATGGTTCAGATCAGTGCTCTTAAAGGAGAG
AATATAGACGATTTGCTGGAGACGGTCATGCTTGTTGCGGAGTTGCAAGAGTTGAAGGCT
AATCCTCAAAGAAATGCCAAGGGGACTGTGATTGAGGCAGGTCTCGATAAATCTAAAGGA
CCTGTAGCAACATTCATTGTGCAGAATGGTACACTTAAAGGAGGAGACGTAGTAGTTTGT
GGTGAAGCTTATGGAAAGGTGCGGGCTTTGTTTGATGATAAGGGAAAGCGTGTTGATGAA
GCCGGACCCTCCATACCTGTGCAGGTAATTGGATTGAACAATGTTCCAGTTGCTGGTGAC
GAGTTTGAAGTTGTTGGGTCCCTTGATGTTGCTCGTGAAAAAGCCGAAGCACGAGAGGAG
TCCTTGCGAACTGAGCGTTTATCAGCAAAGGCCGGAGATGGGAAAATTACACTCTCTTCT
TTTGCTTCTGCTGTTTCAGGAGGAACTGGTCTAGACTTGCACCAACTAAATATTATTCTG
AAAGTTGATCTTCAGGGATCGATTGAGGCTGTCAGACAAGCTCTTCAGGTTCTTCCACAG
GATAATGTCACTTTGAAGTTCCTACTGCAAGCTACTGGTGATGTGAATGCCAGCGATGTC
GATCTTGCTGTAGCAAGTAAAGCTATTATTTTCGGCTTTAATGTTAGAACTCCAGGTTCT
GTCAAGAGCTATGCAGACAATAAAGGTGTTGAGATCCGACTGTACAAAGTTATATATGAG
CTTATTGACGATGTGCGAAAAGCAATGGAGGGACTTCTGGAATCAGTTGAGGAACAAGTG
CCAATTGGTTCAGCAGAAGTACGTGCTGTGTTCAGCAGTGGTAGTGGTCGTGTTGCTGGA
TGCATGGTAACAGAGGGAAAAGTAGTGGAAGACTGTGGTATTCGTGTCGTTAGGAAAGGC
AAAGAAGTTCATGTTGGTGTGCTTGAATCTTTAAGACGGGTGAAGGAAGCTGTGAAAGAG
GTTAATGCCGGACTGGAGTGTGGAATTGGGGTCGAGGAGTTCGATGACTGGGAGGTGGGT
GATATTCTGGAGGCTTTCAACTCAGTTCAGAAAAGACGAACACTTGAGGAGGCTTCAGCC
TCAATGGCAGCAGCACTTGAAGAAGTGGGGATAAGCCTATAA

Peptide Sequence

PEP ID

XP_016456731.1
PEP Infomation

PREDICTED: translation initiation factor IF-2, chloroplastic-like [Nicotiana tabacum]
Sequence

MTSMASLVSLGSVCGCSSGGQFEGSFSLVRRVSLANNFRNFNRIWVGKRWRYVSVCRYSV
TTDFVAADQGTSISLDSSSRSNKEDDADLLLKPSPKPQLKPGPKPGPALGMGPVSRNGPV
SSSGSDDEKGNPNEEERSKVIESLGEALEKAEKLETNRKANVLVNNKSSANARTAQRNSK
PVDSDDSSNRKSKTLKSVWKKGNPVAAIQKVVKPPPSKQEPVADSGIRKSESQTVAPLKP
PQPPQKVQPQLQARPSVAPPPPVIKKPVILKDVGAAAKPPPTDGIESAGKTKERKTILVD
KFASKKPAVDPMIAQAVLAPPKPGKSPPPGKFREEFRKKGGASGGQRRRMVDDGIPDEEA
SELDVSIPGAVARKGRKWTKASRKAARLRAAKESAPVKVEILEVGEEGMPTEELAYNLAT
SEGEILGLLYSKGIKPDGVQTLSNDMVKMVCKEYEVEVIDAATVKVEEMARKKEIFNEDD
LDKLQDRPPVITIMGHVDHGKTTLLDHIRKTKVAASEAGGITQGIGAYKVQVPIDTKPQI
CVFLDTPGHEAFGAMRARGARVTDIAIIVVAADDGIRPQTNEAIAHAKAAGVPIVIAINK
IDKDGANPERVMQELSSIGLMPEDWGGDVPMVQISALKGENIDDLLETVMLVAELQELKA
NPQRNAKGTVIEAGLDKSKGPVATFIVQNGTLKGGDVVVCGEAYGKVRALFDDKGKRVDE
AGPSIPVQVIGLNNVPVAGDEFEVVGSLDVAREKAEAREESLRTERLSAKAGDGKITLSS
FASAVSGGTGLDLHQLNIILKVDLQGSIEAVRQALQVLPQDNVTLKFLLQATGDVNASDV
DLAVASKAIIFGFNVRTPGSVKSYADNKGVEIRLYKVIYELIDDVRKAMEGLLESVEEQV
PIGSAEVRAVFSSGSGRVAGCMVTEGKVVEDCGIRVVRKGKEVHVGVLESLRRVKEAVKE
VNAGLECGIGVEEFDDWEVGDILEAFNSVQKRRTLEEASASMAAALEEVGISL

Transcript Sequence

Gene sequence data has not been registered.